All functions

FGSEAList-class

Fast GSEA list

RankedList()

Ranked list of genes

collectionNames() `collectionNames<-`()

Gene set collection names

combine()

Combining or merging different Bioconductor data structures

contrastNames() `contrastNames<-`()

Contrast names

enrichedGeneSets()

Enriched pathways

export()

Export

gsea

FGSEAList example data

pfgsea()

Parameterized fast gene set enrichment analysis (GSEA)

plotEnrichedGeneSets()

Plot enriched gene sets

plotEnrichedUpset()

UpSet plot of directional enriched pathway intersections across contrasts

plotGSEATable()

Plot GSEA enrichment table

show(<FGSEAList>)

Show an object

topTables()

Top tables